1. Reconstruction and Spectral Analysis for Optical Coherence Tomography

    Reconstruction and Spectral Analysis for Optical Coherence Tomography

    MATLAB code for reconstruction and spectral analysis of spectral domain OCT images. This code can be used as part of a platform for molecular imaging with OCT, which we call MOZART. This code was created to read raw interferograms from Thorlabs OCTs (SW version 4 works best, but version 3 is also supported with a few changes). It reconstructs the raw interferograms into OCT images, and supports both 2D, 3D and speckle variance. In addition to reconstructing the images this code: Calculates the normalized spcekle variance (useful for detecting blood vessels) Calculates dispersion compensation Calculates a map of spectral contras ...

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