1. Compensation of systematic effects in low coherence interferometry

    In general, in one aspect, the invention features a method that includes transforming interferometry data acquired for a test sample using a low coherence imaging interferometry system to a frequency domain and, at a plurality of frequencies in the frequency domain, reducing contributions to the transformed interferometry data due to imperfections in the imaging interferometry system thereby producing compensated interferometry data. The errors are reduced based on variations between interferometry data acquired using the low coherence imaging interferometry system for a calibration sample and model interferometry data corresponding to data acquired for the calibration sample using a model interferometry system.
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